patientImaging
==============

.. currentmodule:: PDCP

.. autoclass:: patientImaging
   :show-inheritance:

   .. rubric:: Methods Summary

   .. autosummary::

      ~patientImaging.adapt_dataset_from_bytes
      ~patientImaging.check_if_organs_in_rtstruct
      ~patientImaging.collect_pids_orthanc
      ~patientImaging.export_2_matlab
      ~patientImaging.export_2_pickle
      ~patientImaging.generate_imaging_dataframe_threading
      ~patientImaging.generate_orthanc_files_summaries
      ~patientImaging.generate_patients_data
      ~patientImaging.get
      ~patientImaging.get_ct_nifti
      ~patientImaging.get_ct_threading
      ~patientImaging.get_instance_details
      ~patientImaging.get_masks_nifti
      ~patientImaging.get_pid
      ~patientImaging.get_rtdoses
      ~patientImaging.get_rtplan
      ~patientImaging.get_rtstruct
      ~patientImaging.imagefile_summary
      ~patientImaging.imagefiles_summaries
      ~patientImaging.load
      ~patientImaging.load_ct_nifti_2_numpyarray
      ~patientImaging.load_doses_2_numpyarray
      ~patientImaging.load_nifti_mask_2_numpyarray
      ~patientImaging.load_nifti_masks
      ~patientImaging.load_roi_names_from_rtstuct
      ~patientImaging.load_url
      ~patientImaging.loadpatientnotes
      ~patientImaging.prepare_patient_directory
      ~patientImaging.purge
      ~patientImaging.recommendation
      ~patientImaging.remove_phantom_studies
      ~patientImaging.remove_unused_rtstructs
      ~patientImaging.savepatientnotes
      ~patientImaging.search_for_code
      ~patientImaging.select_and_combine_dosegrids
      ~patientImaging.verify_initial
      ~patientImaging.verify_study

   .. rubric:: Methods Documentation

   .. automethod:: adapt_dataset_from_bytes
   .. automethod:: check_if_organs_in_rtstruct
   .. automethod:: collect_pids_orthanc
   .. automethod:: export_2_matlab
   .. automethod:: export_2_pickle
   .. automethod:: generate_imaging_dataframe_threading
   .. automethod:: generate_orthanc_files_summaries
   .. automethod:: generate_patients_data
   .. automethod:: get
   .. automethod:: get_ct_nifti
   .. automethod:: get_ct_threading
   .. automethod:: get_instance_details
   .. automethod:: get_masks_nifti
   .. automethod:: get_pid
   .. automethod:: get_rtdoses
   .. automethod:: get_rtplan
   .. automethod:: get_rtstruct
   .. automethod:: imagefile_summary
   .. automethod:: imagefiles_summaries
   .. automethod:: load
   .. automethod:: load_ct_nifti_2_numpyarray
   .. automethod:: load_doses_2_numpyarray
   .. automethod:: load_nifti_mask_2_numpyarray
   .. automethod:: load_nifti_masks
   .. automethod:: load_roi_names_from_rtstuct
   .. automethod:: load_url
   .. automethod:: loadpatientnotes
   .. automethod:: prepare_patient_directory
   .. automethod:: purge
   .. automethod:: recommendation
   .. automethod:: remove_phantom_studies
   .. automethod:: remove_unused_rtstructs
   .. automethod:: savepatientnotes
   .. automethod:: search_for_code
   .. automethod:: select_and_combine_dosegrids
   .. automethod:: verify_initial
   .. automethod:: verify_study