patientImagingCR

class PDCP.patientImagingCR(codesconfig=None)

Bases: PDCP.patientImaging

This is the class used to collect the patients data where the CT & the RTSTRUCT are only required.

Methods Summary

generate_patients_data(firstversion)

A function that collects a set of patients required and verified files (CT slices, rt structs, etc.) from the orthanc server.

verify_study(df, notes[, modality])

Within this function, the links between different modalities are identified to find connections.

Methods Documentation

generate_patients_data(firstversion)

A function that collects a set of patients required and verified files (CT slices, rt structs, etc.) from the orthanc server.

Parameters

  • orthanc_ids (list) – a list of orthanc ids

  • patients_ids (list) – a list of patient ids

Returns

  • pids (list) – the patient ids

  • comments (list) – a list of the patients comments (_SUCCESS, _ERROR, or _PATIENTIMAGESNOTFOUND)

verify_study(df, notes, modality='CT')

Within this function, the links between different modalities are identified to find connections. It is expected that each CT will have associated RTSTRUCTS To do that, the CT SeriesInstanceUID links to the RTSTRUCT through the tag: ReferencedFrameOfReferenceSequence – > SeriesInstanceUID

Parameters

  • df (Pandas dataframe) – a dataframe with the patient imaging records

  • notes (list) – a list that contians the notes, and is used to append new notes while verifying the patient files.

Returns

  • list_of_values (list of dicts) – A list of dictionaries that contain the details of associations between studies objects.

  • notes (list) – list of notes appended while verifying the patient’s imaging files.